Complete genome sequence of rose virus A, the first carlavirus identified in rose.
Identifieur interne : 000501 ( Main/Exploration ); précédent : 000500; suivant : 000502Complete genome sequence of rose virus A, the first carlavirus identified in rose.
Auteurs : Alfredo Diaz-Lara [États-Unis] ; Dimitre Mollov [États-Unis] ; Deborah Golino [États-Unis] ; Maher Al Rwahnih [États-Unis]Source :
- Archives of virology [ 1432-8798 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Carlavirus.
- méthodes : Séquençage du génome entier.
- virologie : Rosa.
- classification : Cadres ouverts de lecture, Carlavirus, Génome viral, Phylogenèse, Séquençage nucléotidique à haut débit, Taille du génome.
English descriptors
- KwdEn :
- MESH :
- classification : Carlavirus.
- genetics : Carlavirus.
- methods : Whole Genome Sequencing.
- virology : Rosa.
- Genome Size, Genome, Viral, High-Throughput Nucleotide Sequencing, Open Reading Frames, Phylogeny.
Abstract
A novel virus was discovered in a Rosa wichuraiana Crep. by high-throughput sequencing and tentatively named "rose virus A" (RVA). Based on sequence identity and phylogenetic analysis, RVA represents a new member of the genus Carlavirus (family Betaflexiviridae). The genome of RVA is 8,849 nucleotides long excluding the poly(A) tail and contains six open reading frames (ORFs). The predicted ORFs code for a replicase, triple gene block (TGB), coat protein, and nucleic acid binding protein, as in a typical carlavirus. RVA is the first carlavirus identified in rose and has the highest nucleotide sequence similarity to poplar mosaic virus. Reverse transcription-PCR-based assays were developed to confirm the presence of RVA in the original source and to screen additional rose plants.
DOI: 10.1007/s00705-019-04460-1
PubMed: 31701224
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Reverse transcription-PCR-based assays were developed to confirm the presence of RVA in the original source and to screen additional rose plants.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31701224</PMID><DateCompleted><Year>2020</Year><Month>01</Month><Day>17</Day></DateCompleted><DateRevised><Year>2020</Year><Month>01</Month><Day>17</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-8798</ISSN><JournalIssue CitedMedium="Internet"><Volume>165</Volume><Issue>1</Issue><PubDate><Year>2020</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Archives of virology</Title><ISOAbbreviation>Arch Virol</ISOAbbreviation></Journal><ArticleTitle>Complete genome sequence of rose virus A, the first carlavirus identified in rose.</ArticleTitle><Pagination><MedlinePgn>241-244</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00705-019-04460-1</ELocationID><Abstract><AbstractText>A novel virus was discovered in a Rosa wichuraiana Crep. by high-throughput sequencing and tentatively named "rose virus A" (RVA). Based on sequence identity and phylogenetic analysis, RVA represents a new member of the genus Carlavirus (family Betaflexiviridae). The genome of RVA is 8,849 nucleotides long excluding the poly(A) tail and contains six open reading frames (ORFs). The predicted ORFs code for a replicase, triple gene block (TGB), coat protein, and nucleic acid binding protein, as in a typical carlavirus. RVA is the first carlavirus identified in rose and has the highest nucleotide sequence similarity to poplar mosaic virus. Reverse transcription-PCR-based assays were developed to confirm the presence of RVA in the original source and to screen additional rose plants.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Diaz-Lara</LastName><ForeName>Alfredo</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California-Davis, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mollov</LastName><ForeName>Dimitre</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>USDA-ARS, National Germplasm Resources Laboratory, Beltsville, MD, 20705, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Golino</LastName><ForeName>Deborah</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California-Davis, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Al Rwahnih</LastName><ForeName>Maher</ForeName><Initials>M</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-1589-9234</Identifier><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California-Davis, Davis, CA, 95616, USA. malrwahnih@ucdavis.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>11</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>Austria</Country><MedlineTA>Arch Virol</MedlineTA><NlmUniqueID>7506870</NlmUniqueID><ISSNLinking>0304-8608</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017788" MajorTopicYN="N">Carlavirus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059646" MajorTopicYN="N">Genome Size</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016366" MajorTopicYN="N">Open Reading Frames</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D027826" MajorTopicYN="N">Rosa</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000073336" MajorTopicYN="N">Whole Genome Sequencing</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>07</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>10</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>11</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>1</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>11</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31701224</ArticleId><ArticleId IdType="doi">10.1007/s00705-019-04460-1</ArticleId><ArticleId IdType="pii">10.1007/s00705-019-04460-1</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Diaz Lara, Alfredo" sort="Diaz Lara, Alfredo" uniqKey="Diaz Lara A" first="Alfredo" last="Diaz-Lara">Alfredo Diaz-Lara</name></noRegion><name sortKey="Al Rwahnih, Maher" sort="Al Rwahnih, Maher" uniqKey="Al Rwahnih M" first="Maher" last="Al Rwahnih">Maher Al Rwahnih</name><name sortKey="Golino, Deborah" sort="Golino, Deborah" uniqKey="Golino D" first="Deborah" last="Golino">Deborah Golino</name><name sortKey="Mollov, Dimitre" sort="Mollov, Dimitre" uniqKey="Mollov D" first="Dimitre" last="Mollov">Dimitre Mollov</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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